Building Blocks

1-Hydroxycyclopentane-1-carbonitrile is a monomer that is hydrolyzed to form benzoin and cyanohydrins. It can be used in the production of scifinder as a monomer or dimerizer.

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Boc-His(Trt)-OH is a chemical compound that has been used in the laboratory to study uptake and binding of compounds. It is stable in complex with albumin, which has led to its use as a model system for studying hepatic steatosis. This chemical can be synthesized by solid-phase synthesis with trifluoroacetic acid and polypeptide synthesis. FT-IR spectroscopy has been used to characterize Boc-His(Trt)-OH, revealing its chemical diversity.

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2,4-Dibromopyridine is a brominated derivative of pyridine. It is synthesized through the substitution of two bromine atoms for two hydrogens on the pyridine ring. This synthesis can be achieved by disubstitution or cross-coupling reactions. The reaction products are nucleophilic and react with electrophiles to produce substitution products. The reaction mechanism is thought to involve a six-membered transition state, which has been observed using X-ray absorption spectroscopy.

3,5-Dimethylbenzaldehyde is an organic compound that is a colorless liquid. It has a chemical formula of C9H12O2 and is classified as an aldehyde. 3,5-Dimethylbenzaldehyde can be synthesized by the reaction of isopropyl palmitate with xylene in the presence of carbon as a source. The reaction time required for this synthesis is approximately one day. The major products of this reaction are 3,5-dimethylbenzaldehyde and 2-methylbutanal. This reaction mechanism can also be used to determine the concentration of urinary metabolites in human urine samples. Analysis of these samples requires an organic solvent such as hexane or dichloromethane. Kinetic data was collected from the rate at which zinc powder reacts with 3,5-dimethylbenzaldehyde over time at different concentrations. A kinetic experiment was conducted using c–h bond activation to produce 3,5-dimethoxy

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Phentolamine is a synthetic mesylate that is used as an antihypertensive agent, and for the treatment of Raynaud's syndrome and pheochromocytoma. Phentolamine is also used to prevent frostbite and to treat various types of shock. Phentolamine blocks alpha-2-adrenergic receptors, thereby decreasing sympathetic nerve impulses to the heart, blood vessels, kidneys, and other organs. This drug also acts as a histamine antagonist by blocking H1-receptors on vascular smooth muscle cells. Phentolamine has been shown to have no significant effects on 5-hydroxytryptamine (5HT) release in vitro or in vivo.

7-Bromo-1-methylnaphthalene is a fluorescent dye that can be used to measure the concentration of DNA, RNA, and proteins. This compound is an intercalator, which means that it can bind to double stranded DNA or RNA near the center of the molecule where there is a space for binding. It has been used in the study of the thymic gland because it binds to DNA and RNA in cells from this organ. 7-Bromo-1-methylnaphthalene has also been used as a skeleton for organic compounds, such as dimethylammonium. The bromine atom in this compound can be replaced with other atoms like iodine or chlorine to make different colored dyes.

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

(Chloromethyl)cyclohexane is a synthase gene that is responsible for synthesizing the enzyme chloromethyl cyclohexane, which is used as a solid catalyst. The synthesis of (chloromethyl)cyclohexane from phenyl groups and liquid crystal composition has been demonstrated using expression plasmids and active oxygen. The compound inhibits inflammatory diseases by preventing the production of arachidonic acid, which is an inflammatory agent. This compound also inhibits the production of prostaglandins, which are involved in the release of histamine from mast cells. Pharmaceutical preparations that contain this compound are primarily used to treat rheumatoid arthritis and other inflammatory diseases.

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

2-Amino-6-chloropurine is a nucleophilic substituent that is used in the synthesis of 2-amino-6-chloropurine. It reacts with hydroxyl groups to form a palladium-catalyzed coupling reaction solution, which is then treated with hydrochloric acid and trifluoroacetic acid. The product is purified by crystallization and recrystallization. This compound has potent antitumor activity against carcinoma cell lines, but it has not been shown to have any effect against Mycobacterium tuberculosis.

2-Bromo-3,3,3-trifluoro-1-propene is a chemical compound that has been synthesized in an asymmetric reaction. The reactant is bromopropane and the product is 2,2,2-trifluoropropene. The methylene group on the propene molecule is activated by the nucleophilic attack of a fluoride ion from hydrogen fluoride to form a cavity with a highly strained bond. The kinetic study of this reaction revealed that the activation energy for the reaction is 42 kJ/mol. Palladium-catalyzed coupling reactions are catalyzed by palladium and require nonpolar solvents such as toluene or dichloromethane. This type of reaction has been shown to be exothermic with an isolated yield of 1%.

3-Bromo-4-chloroaniline is a chloroaniline compound. It is synthesized by reacting hexamethylenetetramine with chlorine gas in the presence of formaldehyde and paraformaldehyde. 3-Bromo-4-chloroaniline has been used to produce other compounds, such as trimethylchlorosilane, which is used in the production of silicone rubber. Chloroanilines are toxic chemicals that can be found in the environment and react with formaldehyde to produce carcinogenic substances called halofuginones.

1-Bromo-4-iodobenzene is an aryl halide that can be synthesized by the cross coupling of ethyl formate and hydrochloric acid. This compound is useful in analytical applications, such as chromatographic methods, due to its high solubility in organic solvents. It is also used in synthetic procedures for the preparation of other aryl halides. 1-Bromo-4-iodobenzene has been used to synthesize calcium carbonate via the Suzuki coupling reaction with sodium salts, which are nucleophiles. The carbonyl group on this molecule reacts with the nucleophile, forming an alkyl group and a metal salt. Transfer reactions involving these salts can produce other products with different functional groups.

1,2-Bis(chlorodimethylsilyl)ethane is a reactive chemical that is synthesized from hydroxychloroformates and hydrogen chloride. It reacts with silicon to form chlorosilanes, which are then used in the polymerization of siloxanes. 1,2-Bis(chlorodimethylsilyl)ethane has been shown to be an effective initiator for the polymerization of methyl methacrylate and ethylene glycol dimethacrylate. 1,2-Bis(chlorodimethylsilyl)ethane is also used as a hydroxyl group donor in organic reactions.

2-Hydroxyethyl benzoate is a model system that has been used to study the mechanism of hydrolysis of an ester with a hydroxyl group. The reaction products are a metal hydroxide and a chloride ion. 2-Hydroxyethyl benzoate is an antimicrobial agent that has shown activity against bacteria, fungi, and protozoa. It is thought to work by reacting with fatty acids in the cell membrane, leading to disruption of the membrane and leakage of cellular contents. It also reacts with chloride ions to form hydroxybenzoic acid and water molecules. The activation energy for this reaction was found to be around 19 kJ mol−1.

2,2'-Dithiodianiline is a redox-active molecule with a redox potential of -0.08 V. It has been shown to inhibit the polymerase chain reaction by binding to DNA and inhibiting the enzyme DNA polymerase. 2,2'-Dithiodianiline is a potent inhibitor of bacterial growth in vitro, and has been shown to be cytotoxic in vivo. 2,2'-Dithiodianiline inhibits the growth of resistant mutants that are resistant to other antibiotics such as penicillin and ampicillin. This compound binds to molybdenum at an optimum concentration of 0.5 mM and coordinates through electrostatic interactions with the molybdenum atom. Structural analysis reveals that 2,2'-dithiodianiline forms hydrogen bonds with adenine residues in DNA and interacts with guanine residues in RNA through π-π stacking interactions. This interaction prevents transcription by blocking the binding

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Used in the preparation of metal-diene reagents (e.g. for carbocyclization)

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aliphatic diol.  It has been shown to have an inhibitory effect on bacterial growth

Methyl trans-4-bromo-2-butenoate is a synthetic compound that contains a hydroxyl group and two bromine atoms. It is synthesized by the reaction of diethyl succinate, hydrogen, and piperazine in an aqueous solution. Methyl trans-4-bromo-2-butenoate has been shown to have antineoplastic activity in combination with epidermal growth factor (EGF) and carbohydrate conjugates. It also binds to cell surface receptors on the epidermal cells, inhibiting their growth. The structural formula of methyl trans-4-bromo-2-butenoate can be seen below: [[File:Methyltrans4bromobutanoate.png|thumb|300px|left|The structural formula of methyl trans-[4] -[bromo]-[2] -butenoate.]]

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

Cabozantinib is a small molecule that is the first to target VEGFR-2, which is a receptor tyrosine kinase involved in the development of fibrosis. Cabozantinib inhibits the activity of VEGFR-2 by binding to its ATP-binding site and blocking the phosphorylation of downstream signaling pathways. Cabozantinib has been shown to have antifibrotic properties in both preclinical and clinical models. The drug candidate has been shown to reduce kidney fibrosis in animal models. The standard dose for cabozantinib was found to be 5 mg/kg, with a maximum tolerated dose of 20 mg/kg. In vitro studies have indicated that cabozantinib binds with high affinity to the ATP-binding pocket of VEGFR-2, exhibiting competitive inhibition against other kinases such as PDGFR-beta and cKit, as well as diaryliodonium (a specific inhibitor). Caboz

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

4-Bromopyridine HCl is a chemical compound with the molecular formula C6H5BrN. It is an aromatic heterocycle and is used in organic synthesis as a coupling partner in cross-coupling reactions. The bromine atom of 4-bromopyridine is replaced by chloride, resulting in 4-chloropyridine. The chlorination reaction can be conducted using either hydrochloric acid or thionyl chloride. This process can be done on an industrial scale and the chlorinated product has been used in the manufacture of pharmaceuticals, dyes, and pesticides. The reaction mechanism for this substitution reaction involves a nucleophilic attack by chlorine on the pyridine ring at carbon atom 2 followed by displacement of hydrogen from the adjacent position on nitrogen atom 3. Acylation reactions are oxidation processes that involve conversion of carboxylic acids to acyl halides or acyl chlorides through treatment with acidified halogenating agents such

5-Bromo-2-iodopyridine is an antibiotic that is used to treat bacterial infections. It has been shown to inhibit the growth of bacteria by binding to the 50S ribosomal subunit. This drug also has a toxic effect on respiratory system cells, which may be due to its ability to induce apoptosis. 5-Bromo-2-iodopyridine interacts with DNA in a triazine ring and inhibits bacterial growth by inhibiting protein synthesis. The drug binds to the 50S ribosomal subunit at a site that is different from that of rifampin and other antibiotics. The reaction is catalyzed by palladium at high temperatures and takes place in organic solvents such as chloroform or benzene. This synthetic process can be made more efficient by using inexpensive starting materials, such as bromine, iodine, and acetone, rather than expensive starting materials like platinum or gold salts.

Versatile small molecule scaffold

ABX464 is a monoclonal antibody that targets bacterial translocation. It has been shown to have clinical efficacy in preventing the recurrence of inflammatory bowel disease. ABX464 binds to the M2 phenotype of macrophages and blocks the binding of chemoattractant protein to its receptor, leading to decreased inflammation and less bacterial translocation. It also prevents HIV infection by blocking viral attachment to CD4 cells and inhibiting HIV-1 replication.

2-Methoxy-benzenesulfonic acid is a synthetic chemical compound that is used in the production of polymers and other ester compounds. It can be produced by reacting benzenesulfonyl chloride with methanol in the presence of a strong acid catalyst. 2-Methoxy-benzenesulfonic acid reacts with radiation to produce reactive oxygen species that are capable of damaging cellular structures. The molecule contains an intramolecular hydrogen bond, which stabilizes the structure and helps to form hydrogen bonds with other molecules. 2-Methoxy-benzenesulfonic acid also has a hydroxyl group, which allows it to function as an acidic compound that can react with water and cause inflammation. This functional group also makes it soluble in water, allowing it to penetrate tissue structures.

Versatile small molecule scaffold

Versatile small molecule scaffold

3-Methoxythiophene-2-carbaldehyde is a ligand that has been shown to form a stable complex with potassium chloride. This compound is also reactive, and can be stabilized in the reaction vessel. In the presence of sulfate ions, 3-methoxythiophene-2-carbaldehyde will react to form a phosphotungstic acid precipitate. The dehydrated salt can be recrystallized by adding phosphotungstic acid, which stabilizes the product.

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

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Tripropylphosphine is a fatty acid that can be synthesized by reacting tripropyl alcohol with phosphorus trichloride. Tripropylphosphine is soluble in organic solvents, and has an optical rotation of +58°. It has been shown to have cancer-inhibiting properties, as well as the ability to inhibit tumor growth and induce apoptosis in cancer cells. This compound may also be used as a growth regulator, since it inhibits the synthesis of certain proteins and enzymes.

4,5-Dihydroxy-2,3-pentanedione is a carbonyl compound that is the product of the oxidation of ascorbic acid. It is used in wastewater treatment and has antimicrobial properties against infectious diseases. This compound has been shown to inhibit protein synthesis by binding to the ribosome and preventing the formation of peptide bonds between amino acids. 4,5-Dihydroxy-2,3-pentanedione has also been shown to bind to plasma proteins, which may be due to its acyl chain structure. 4,5-Dihydroxy-2,3-pentanedione can be synthesized in a catalytic mechanism that involves dehydroascorbic acid and molecular oxygen.

Versatile small molecule scaffold

Versatile small molecule scaffold

2-(4-Methoxy-1H-indol-3-yl)ethan-1-amine is a synthetic compound that belongs to the class of organocatalysts. It is a serotonin receptor agonist, and has been shown to act as an antagonist at the 5HT2AR. This drug has been shown to have stereoselective effects in vitro, with high affinity for the S form of 5HT2AR. 2-(4-Methoxy-1H-indol-3-yl)ethan-1-amine also has some activity against dopamine receptors, but not as much as other compounds in its class. !--[if !supportLists]-->· !--[endif]-->This drug binds to speciogynine and alstovenine receptors, which are part of the opioid system.!--[if !supportLists]-->· !--[endif]-->Modelling studies suggest that 2-(4-M

8-Chloro-3,7-dihydro-1H-purine-2,6-dione is a reactive molecule that binds to the active site of bacterial cyclic nucleotide phosphodiesterases and inhibits their activity. This inhibition prevents the breakdown of cAMP and cGMP, which are important second messengers in eukaryotic cells. 8-Chloro-3,7-dihydro-1H-purine-2,6-dione is also a potent inhibitor of protein synthesis and has been used in research studies on wheat leaves.

Versatile small molecule scaffold

Poly(dioxanone) is a biocompatible polymer that has been shown to promote bone growth in animal models. It is a cross-linking agent and can be used as an alternative to copper chromite, which is the most common cross-linking agent used in tissue engineering. Poly(dioxanone) has been shown to promote bone growth by stimulating the production of growth factors and increasing the activity of osteoblasts, cells that produce new bone. The material also promotes matrix deposition and remodeling, leading to increased bone density.

Versatile small molecule scaffold

Versatile small molecule scaffold

Versatile small molecule scaffold

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Piperyline is an alkanoic acid that has shown to be effective against skin cancer. It also has antimicrobial properties, which may be due to its ability to bind metal ions and form polymeric compounds. Piperyline inhibits microbial growth by inhibiting the synthesis of proteins and nucleic acids. The antimicrobial activity is related to its cationic polymerization with hydroxyl groups, which forms a structure that can inhibit microbial enzymes and disrupt microbial cell membranes. This compound also interacts with the skin's natural lipids, making it difficult for microorganisms to attach and grow on the skin. Piperyline is synthesized in organic chemistry laboratories as an amide precursor of other pharmaceuticals such as penicillin.

Versatile small molecule scaffold

Chloromethyl cyclohexyl ether is a light-sensitive cross-linking agent that can be activated by light. It has two functional groups, a hydroxyl group and a chlorine atom. The skeleton of chloromethyl cyclohexyl ether is composed of an alicyclic hydrocarbon with six carbons and the molecule contains two divalent hydrocarbons, one of which is a trifluoromethyl group. Chloromethyl cyclohexyl ether has been used as a solid catalyst in the synthesis of amides and is also used in hyperproliferative diseases such as cancer.

Versatile small molecule scaffold