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CAS 98796-51-1

:

Thymidine, 5′-O-[bis(4-methoxyphenyl)phenylmethyl]-, 3′-[2-cyanoethyl N,N-bis(1-methylethyl)phosphoramidite]

Description:
Thymidine, 5′-O-[bis(4-methoxyphenyl)phenylmethyl]-, 3′-[2-cyanoethyl N,N-bis(1-methylethyl)phosphoramidite], commonly referred to by its CAS number 98796-51-1, is a synthetic nucleoside derivative used primarily in the field of molecular biology and biochemistry. This compound features a thymidine base, which is a component of DNA, modified at both the 5' and 3' positions. The 5' position is substituted with a bis(4-methoxyphenyl)phenylmethyl group, enhancing its stability and solubility, while the 3' position is modified with a cyanoethyl phosphoramidite moiety, which is crucial for its role in oligonucleotide synthesis. The presence of the phosphoramidite group allows for the incorporation of this compound into DNA strands during solid-phase synthesis, making it valuable for producing custom oligonucleotides for research and therapeutic applications. Its structural characteristics contribute to its reactivity and utility in various biochemical processes, particularly in the synthesis of DNA and RNA analogs.
Formula:C40H49N4O8P
InChI:InChI=1/C10H14N2O5.C3H6N2O2P/c1-5-3-12(10(16)11-9(5)15)8-2-6(14)7(4-13)17-8;1-3(2-4)7-8(5)6/h3,6-8,13-14H,2,4H2,1H3,(H,11,15,16);3H,5H2,1H3/q;-1/t6-,7+,8+;/m0./s1
InChI key:InChIKey=UNOTXUFIWPRZJX-CEXSRUIHSA-N
SMILES:C(OC[C@@H]1[C@@H](OP(N(C(C)C)C(C)C)OCCC#N)C[C@@H](O1)N2C(=O)NC(=O)C(C)=C2)(C3=CC=C(OC)C=C3)(C4=CC=C(OC)C=C4)C5=CC=CC=C5
Synonyms:
  • 5'-Dimethoxytrityl-3'-deoxythymidine 2'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite
  • 5'-O-(4,4'-Dimethoxytrityl)-thymidine-3'-cyanoethyl Phosphoramidite
  • 5′-O-(4,4′-Dimethoxytrityl)thymidine 3′-(2-cyanoethyl-N,N-diisopropylphosphoramidite)
  • 5′-O-(4,4′-Dimethoxytriyl)thymidine 3′-(2-cyanoethyl)-N,N-diisopropylphosphoramidite
  • 5′-O-DMT-thymidine 3′-CE phosphoramidite
  • DMT-dT phosphoramidite
  • DNA T Phosphoramidite
  • DT-CE phosphoramidite
  • Deoxythymidine phosphoramidite
  • Thymidine phosphoramidite
  • See more synonyms
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